Variant report

Variant	rs9442892
Chromosome Location	chr6:73844209-73844210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73121917..73122510-chr6:73843982..73844497,2	K562	blood:
2	chr6:73329575..73331858-chr6:73843020..73845929,2	K562	blood:
3	chr6:73121460..73122562-chr6:73843495..73844681,5	MCF-7	breast:
4	chr6:73843144..73846090-chr6:73848309..73850546,2	K562	blood:

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1113016	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11962533	0.86[ASN][1000 genomes]
rs11965567	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11968396	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418414	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573057	0.86[ASN][1000 genomes]
rs16883384	0.87[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2051024	0.81[AMR][1000 genomes]
rs2796044	0.84[AMR][1000 genomes]
rs6453633	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6904597	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6906616	0.86[ASN][1000 genomes]
rs6906825	0.86[ASN][1000 genomes]
rs6907569	0.86[ASN][1000 genomes]
rs6911751	0.84[AMR][1000 genomes]
rs6912022	0.86[ASN][1000 genomes]
rs6927120	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6927134	1.00[CEU][hapmap]
rs6930212	0.86[ASN][1000 genomes]
rs73452858	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73452859	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73452861	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7739692	1.00[CEU][hapmap];0.80[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7743399	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7744386	0.86[ASN][1000 genomes]
rs7744394	0.86[ASN][1000 genomes]
rs7748968	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7760644	0.84[AMR][1000 genomes]
rs9341408	1.00[CEU][hapmap]
rs9442891	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442893	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442895	0.84[ASN][1000 genomes]
rs9446846	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9446848	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9446856	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
4	chr6:73839800-73844800	Weak transcription	HSMMtube	muscle
5	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:73840200-73848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:73840200-73848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:73840400-73848000	Weak transcription	NHEK	skin
9	chr6:73841400-73846400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:73841800-73844800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:73842000-73846200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:73842000-73855600	Weak transcription	HSMM	muscle
13	chr6:73843200-73844600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:73843600-73844400	Strong transcription	Primary hematopoietic stem cells	blood
15	chr6:73843600-73844600	ZNF genes & repeats	GM12878-XiMat	blood
16	chr6:73843600-73844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:73843600-73844800	Enhancers	NHLF	lung
18	chr6:73843600-73845400	Enhancers	Fetal Lung	lung
19	chr6:73843600-73846000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:73843600-73846400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:73844000-73844600	Strong transcription	Primary T cells from cord blood	blood
22	chr6:73844200-73844400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:73844200-73844600	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr6:73844200-73844600	Enhancers	Psoas Muscle	Psoas
25	chr6:73844200-73844600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:73844200-73844600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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