Variant report

Variant	rs6453633
Chromosome Location	chr6:73815651-73815652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73815263..73817266-chr6:73822401..73824311,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1113015	0.92[JPT][hapmap];0.90[MKK][hapmap];0.86[AMR][1000 genomes]
rs1113016	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962533	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes]
rs11965567	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418414	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1573057	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs16883384	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2051024	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs4235873	0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs4706528	0.86[AMR][1000 genomes]
rs4708033	0.84[AMR][1000 genomes]
rs6904597	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906616	0.85[AMR][1000 genomes]
rs6906825	0.88[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes]
rs6907569	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes]
rs6911409	0.93[JPT][hapmap];0.81[AMR][1000 genomes]
rs6911751	0.85[JPT][hapmap];0.89[MEX][hapmap]
rs6912022	0.88[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes]
rs6927120	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927134	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs6930212	0.87[AMR][1000 genomes]
rs6933361	0.86[AMR][1000 genomes]
rs6933440	0.93[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap]
rs73452858	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452859	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452861	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743399	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744386	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes]
rs7744394	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes]
rs7748968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs7764373	0.89[MEX][hapmap]
rs7772526	0.93[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap]
rs7776435	0.86[AMR][1000 genomes]
rs9293920	0.86[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.85[AMR][1000 genomes]
rs9341404	0.93[JPT][hapmap];0.86[AMR][1000 genomes]
rs9341408	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs9341409	0.86[AMR][1000 genomes]
rs9343006	0.85[AMR][1000 genomes]
rs9343009	0.86[JPT][hapmap];0.80[MEX][hapmap];0.87[MKK][hapmap];0.81[AMR][1000 genomes]
rs9350488	0.86[AMR][1000 genomes]
rs9350489	0.86[AMR][1000 genomes]
rs9360636	0.85[AMR][1000 genomes]
rs9442887	0.86[AMR][1000 genomes]
rs9442891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442892	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9442895	0.88[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes]
rs9446844	0.93[JPT][hapmap];0.89[AMR][1000 genomes]
rs9446845	0.81[JPT][hapmap]
rs9446846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9446853	0.82[YRI][hapmap]
rs9446856	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73807600-73815800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73810000-73815800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73813000-73830200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:73813800-73821000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73814200-73821000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:73814600-73830200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:73814800-73831200	Weak transcription	HSMM	muscle
9	chr6:73815200-73816200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73815200-73816400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:73815200-73839400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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