Variant report

Variant	rs7772526
Chromosome Location	chr6:73845366-73845367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73329575..73331858-chr6:73843020..73845929,2	K562	blood:
2	chr6:73843144..73846090-chr6:73848309..73850546,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-257K9.7.1-1	chr6:73845290-73845882	ENSG00000229154.1

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1113015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1113016	0.81[AMR][1000 genomes]
rs11962533	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs11963032	0.89[EUR][1000 genomes]
rs11965567	0.81[AMR][1000 genomes]
rs1418414	0.81[AMR][1000 genomes]
rs1573057	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs16883384	0.86[JPT][hapmap]
rs1935530	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs2051024	0.85[MEX][hapmap]
rs2796044	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2796047	0.85[TSI][hapmap]
rs2796051	0.85[TSI][hapmap]
rs2796052	0.82[ASN][1000 genomes]
rs2797089	0.85[TSI][hapmap]
rs4084853	0.85[TSI][hapmap]
rs4142649	0.92[TSI][hapmap]
rs4235873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4379253	0.85[TSI][hapmap]
rs4706528	0.82[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4708028	0.86[AMR][1000 genomes]
rs4708033	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6453633	0.93[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap]
rs6453636	0.85[TSI][hapmap]
rs6904597	0.81[AMR][1000 genomes]
rs6906616	0.81[AMR][1000 genomes]
rs6906825	0.88[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.81[AMR][1000 genomes]
rs6907569	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs6911409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911751	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6912022	0.88[GIH][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs6927120	0.81[AMR][1000 genomes]
rs6927134	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6927779	0.83[AMR][1000 genomes]
rs6930212	0.82[AMR][1000 genomes]
rs6933361	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6933440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs73452859	0.81[AMR][1000 genomes]
rs73452861	0.81[AMR][1000 genomes]
rs7739692	0.93[JPT][hapmap]
rs7743399	0.81[AMR][1000 genomes]
rs7744386	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs7744394	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs7748968	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs7760644	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7764373	0.85[MEX][hapmap]
rs7764571	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7776435	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9293919	0.85[TSI][hapmap]
rs9293920	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9341404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9341408	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9341409	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343006	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343009	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9350488	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9350489	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9359017	0.85[TSI][hapmap]
rs9360636	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360640	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9442887	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9442891	0.85[JPT][hapmap]
rs9442893	0.86[JPT][hapmap]
rs9442895	0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs9446844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9446845	0.91[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9446846	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs9446848	0.86[JPT][hapmap];0.90[MEX][hapmap]
rs9446851	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9446856	0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs947611	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
4	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:73840200-73848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:73840200-73848200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:73840400-73848000	Weak transcription	NHEK	skin
8	chr6:73841400-73846400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73842000-73846200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73842000-73855600	Weak transcription	HSMM	muscle
11	chr6:73843600-73845400	Enhancers	Fetal Lung	lung
12	chr6:73843600-73846000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:73843600-73846400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:73844400-73845800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:73844600-73845400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:73844600-73847600	Weak transcription	GM12878-XiMat	blood
18	chr6:73844600-73849800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:73844800-73846800	Weak transcription	NHLF	lung
21	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:73845000-73846400	Strong transcription	Primary B cells from cord blood	blood

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