Variant report

Variant	rs9446851
Chromosome Location	chr6:73854493-73854494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:73854440-73854634	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
KCNQ5-AS1	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1113015	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11962533	0.84[AMR][1000 genomes]
rs11963032	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1573057	0.83[AMR][1000 genomes]
rs2796044	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2796052	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4235873	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4706528	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4708028	0.83[AMR][1000 genomes]
rs4708033	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6906616	0.84[AMR][1000 genomes]
rs6906825	0.84[AMR][1000 genomes]
rs6907569	0.84[AMR][1000 genomes]
rs6911409	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6911751	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6912022	0.84[AMR][1000 genomes]
rs6927134	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6927779	0.81[AMR][1000 genomes]
rs6930212	0.83[AMR][1000 genomes]
rs6933361	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7744386	0.84[AMR][1000 genomes]
rs7744394	0.84[AMR][1000 genomes]
rs7760644	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7764571	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772526	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7776435	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9293920	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9341404	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9341408	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9341409	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9343006	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9343009	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9350488	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9350489	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9360636	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9360640	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9442887	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9442895	0.84[AMR][1000 genomes]
rs9446844	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9446845	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9446856	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73842000-73855600	Weak transcription	HSMM	muscle
2	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:73846000-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73853000-73856200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:73854400-73854600	ZNF genes & repeats	Aorta	Aorta
9	chr6:73854400-73854600	Enhancers	Esophagus	oesophagus
10	chr6:73854400-73854600	Enhancers	GM12878-XiMat	blood
11	chr6:73854400-73854800	Enhancers	Brain Anterior Caudate	brain
12	chr6:73854400-73856600	Strong transcription	Primary B cells from cord blood	blood

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