Variant report

Variant	rs9446845
Chromosome Location	chr6:73840133-73840134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73121580..73122582-chr6:73839170..73840509,9	MCF-7	breast:
2	chr6:73325865..73326790-chr6:73839227..73840215,3	MCF-7	breast:
3	chr6:73121805..73122626-chr6:73839312..73840201,4	MCF-7	breast:
4	chr6:73325918..73327224-chr6:73839102..73840270,6	MCF-7	breast:
5	chr6:73324743..73325282-chr6:73839253..73840155,2	MCF-7	breast:
6	chr6:73331578..73332186-chr6:73839406..73840248,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1113015	0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1113016	0.81[AMR][1000 genomes]
rs11962533	0.81[AMR][1000 genomes]
rs11963032	0.89[EUR][1000 genomes]
rs11965567	0.81[AMR][1000 genomes]
rs1418414	0.81[AMR][1000 genomes]
rs1573057	0.82[AMR][1000 genomes]
rs1935530	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2796044	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4235873	0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706528	0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708028	0.86[AMR][1000 genomes]
rs4708033	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6453633	0.81[JPT][hapmap]
rs6904597	0.81[AMR][1000 genomes]
rs6906616	0.81[AMR][1000 genomes]
rs6906825	0.81[AMR][1000 genomes]
rs6907569	0.81[AMR][1000 genomes]
rs6911409	0.91[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911751	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6912022	0.81[AMR][1000 genomes]
rs6927120	0.81[AMR][1000 genomes]
rs6927134	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6927759	0.83[ASN][1000 genomes]
rs6927779	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6930212	0.82[AMR][1000 genomes]
rs6933361	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933440	0.91[JPT][hapmap]
rs73452859	0.81[AMR][1000 genomes]
rs73452861	0.81[AMR][1000 genomes]
rs7739692	0.81[JPT][hapmap]
rs7743399	0.81[AMR][1000 genomes]
rs7744386	0.81[AMR][1000 genomes]
rs7744394	0.81[AMR][1000 genomes]
rs7760644	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7764571	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7772526	0.91[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7776435	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9293920	0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9341404	0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341408	0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341409	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343006	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343009	0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9350488	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9350489	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9360636	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9360640	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9442887	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9442895	0.81[AMR][1000 genomes]
rs9446844	0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9446851	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9446856	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73831200-73841600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:73831800-73843600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73832000-73841600	Weak transcription	HSMM	muscle
6	chr6:73832400-73841400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73834000-73844000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73834400-73841400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
10	chr6:73839400-73840200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:73839400-73840200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:73839400-73840200	Enhancers	GM12878-XiMat	blood
13	chr6:73839400-73840400	Enhancers	HMEC	breast
14	chr6:73839400-73840400	Enhancers	NHEK	skin
15	chr6:73839600-73840200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:73839600-73840200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:73839600-73840200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:73839600-73840200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:73839600-73840200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:73839600-73840200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:73839600-73840200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:73839600-73840200	Enhancers	Brain Angular Gyrus	brain
23	chr6:73839600-73840200	Enhancers	Brain Substantia Nigra	brain
24	chr6:73839600-73840200	Enhancers	Fetal Brain Male	brain
25	chr6:73839600-73840200	Enhancers	K562	blood
26	chr6:73839600-73841800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:73839800-73840200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:73839800-73840200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:73839800-73840200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:73839800-73840200	Enhancers	Fetal Muscle Leg	muscle
31	chr6:73839800-73840200	Enhancers	Osteobl	bone
32	chr6:73839800-73840400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:73839800-73840400	Enhancers	NHDF-Ad	bronchial
34	chr6:73839800-73841600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:73839800-73843600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:73839800-73843600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:73839800-73844200	Weak transcription	Psoas Muscle	Psoas
38	chr6:73839800-73844800	Weak transcription	HSMMtube	muscle
39	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:73840000-73840200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:73840000-73840200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:73840000-73840200	Enhancers	Ovary	ovary
43	chr6:73840000-73841400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:73840000-73844200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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