Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73738206..73738747-chr6:73814378..73815243,2	MCF-7	breast:
2	6:73814390-73815633..6:74078047-74099067	Hela-S3	cervix:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10498890	0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11968396	0.84[MEX][hapmap]
rs16883380	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16883384	0.81[AMR][1000 genomes]
rs16883387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58439359	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59347822	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6453633	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs6906825	0.84[MEX][hapmap]
rs6911751	0.89[MEX][hapmap]
rs6933440	0.85[MEX][hapmap]
rs7742937	0.82[AFR][1000 genomes]
rs7744354	0.90[CHB][hapmap];0.87[EUR][1000 genomes]
rs7748968	0.94[MEX][hapmap];1.00[TSI][hapmap]
rs7764373	0.90[CHB][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap];0.87[EUR][1000 genomes]
rs7772526	0.85[MEX][hapmap]
rs9293920	0.85[MEX][hapmap]
rs9442891	0.81[AMR][1000 genomes]
rs9442892	0.81[AMR][1000 genomes]
rs9442893	0.81[AMR][1000 genomes]
rs9446846	0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs9446848	0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs9446852	0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs9446853	0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs9446854	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73807600-73815800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73810000-73815800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73813000-73830200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:73813800-73821000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73814200-73814800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73814200-73821000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73814400-73814800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:73814400-73815200	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:73814600-73815000	Active TSS	Stomach Smooth Muscle	stomach
11	chr6:73814600-73830200	Weak transcription	Primary hematopoietic stem cells	blood

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