Variant report

Variant	rs59347822
Chromosome Location	chr6:73836417-73836418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73835060..73837289-chr6:73840889..73843493,2	K562	blood:
2	chr6:73829322..73830984-chr6:73834609..73837109,2	K562	blood:

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10498890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051024	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58439359	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7744354	0.87[ASN][1000 genomes]
rs7764373	0.86[ASN][1000 genomes]
rs9446852	0.87[ASN][1000 genomes]
rs9446853	0.87[ASN][1000 genomes]
rs9446854	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73815200-73839400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:73818000-73846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:73821400-73839600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:73821800-73839400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:73822000-73839400	Weak transcription	Fetal Heart	heart
7	chr6:73830800-73839600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:73831000-73839600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:73831200-73841600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:73831400-73839600	Weak transcription	HSMMtube	muscle
11	chr6:73831600-73839400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:73831600-73839400	Weak transcription	NHEK	skin
13	chr6:73831600-73839600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:73831800-73839400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:73831800-73843600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:73832000-73841600	Weak transcription	HSMM	muscle
17	chr6:73832400-73839400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:73832400-73841400	Weak transcription	Primary B cells from cord blood	blood
19	chr6:73833800-73839400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:73833800-73839400	Weak transcription	GM12878-XiMat	blood
21	chr6:73834000-73844000	Weak transcription	Primary T cells from cord blood	blood
22	chr6:73834400-73841400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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