Variant report

Variant	rs16883380
Chromosome Location	chr6:73849466-73849467
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10498890	0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11968396	0.84[MEX][hapmap]
rs16883387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2051024	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58439359	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59347822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6906825	0.84[MEX][hapmap]
rs7744354	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs7748968	0.84[MEX][hapmap]
rs7764373	0.90[CHB][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap];0.87[ASN][1000 genomes]
rs9446846	0.84[MEX][hapmap]
rs9446848	0.84[MEX][hapmap]
rs9446852	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs9446853	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs9446854	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv519218	chr6:73845299-73862856	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73821000-73849800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:73839200-73854400	Weak transcription	Aorta	Aorta
3	chr6:73839800-73852400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:73842000-73855600	Weak transcription	HSMM	muscle
5	chr6:73844400-73867000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73844600-73849800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:73844600-73865200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73844800-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:73846000-73866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:73847800-73850600	Strong transcription	Primary B cells from cord blood	blood
12	chr6:73848600-73849800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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