Variant report

Variant	rs11118781
Chromosome Location	chr1:221818135-221818136
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:221816826..221819415-chr1:221839496..221842221,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10495172	0.86[AFR][1000 genomes]
rs10779452	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10863640	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11118768	0.83[AFR][1000 genomes]
rs11118779	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118780	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118782	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118783	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118785	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118786	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118787	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12034889	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12034891	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12038253	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12122580	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12406067	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12740627	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12744344	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12744368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12744805	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338074	0.86[AFR][1000 genomes]
rs1858565	0.86[AFR][1000 genomes]
rs1933268	0.86[AFR][1000 genomes]
rs1949507	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2139349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176691	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3860323	0.89[AFR][1000 genomes]
rs4356058	0.83[EUR][1000 genomes]
rs4498809	0.85[AFR][1000 genomes]
rs4504898	0.83[EUR][1000 genomes]
rs4598493	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6658746	0.86[AFR][1000 genomes]
rs6661629	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6663135	0.85[AFR][1000 genomes]
rs6663644	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6700617	0.86[AFR][1000 genomes]
rs6701049	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7520263	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529202	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7539000	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221815600-221818200	Weak transcription	Fetal Stomach	stomach
2	chr1:221816800-221818400	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:221816800-221818600	Enhancers	Fetal Lung	lung
4	chr1:221817000-221818200	Enhancers	Primary B cells from cord blood	blood
5	chr1:221817000-221818600	Enhancers	Brain Germinal Matrix	brain
6	chr1:221817200-221818400	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:221817400-221818400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:221817400-221818600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:221817400-221818600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:221817400-221818600	Enhancers	Brain Hippocampus Middle	brain
11	chr1:221817600-221818400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:221817600-221818400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:221817600-221818400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr1:221817600-221818600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:221817600-221818600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:221817800-221818400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:221817800-221818400	Enhancers	GM12878-XiMat	blood
18	chr1:221818000-221818400	Enhancers	Brain Anterior Caudate	brain
19	chr1:221818000-221819000	Enhancers	Brain Substantia Nigra	brain
20	chr1:221818000-221819200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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