Variant report

Variant	rs6663135
Chromosome Location	chr1:221780192-221780193
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1018334	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10442685	0.84[AMR][1000 genomes]
rs10495172	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10779452	0.85[AFR][1000 genomes]
rs10863640	0.96[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11118768	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11118777	0.83[EUR][1000 genomes]
rs11118778	0.84[AMR][1000 genomes]
rs11118781	0.85[AFR][1000 genomes]
rs12023780	0.83[AMR][1000 genomes]
rs12026281	0.84[AMR][1000 genomes]
rs12029530	0.84[AMR][1000 genomes]
rs12029601	0.84[AMR][1000 genomes]
rs12744368	0.85[AFR][1000 genomes]
rs12748524	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12753128	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1338074	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1858565	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1879068	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1933268	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1967553	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3860323	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3860324	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4436399	0.84[AMR][1000 genomes]
rs4450027	0.84[AMR][1000 genomes]
rs4484930	0.84[AMR][1000 genomes]
rs4498809	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6658414	0.84[AMR][1000 genomes]
rs6658746	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6658755	0.84[AMR][1000 genomes]
rs6663415	0.84[AMR][1000 genomes]
rs6663637	0.84[AMR][1000 genomes]
rs6663644	0.85[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6666514	0.84[AMR][1000 genomes]
rs6677071	0.84[EUR][1000 genomes]
rs6697462	0.84[AMR][1000 genomes]
rs6700617	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7539000	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221771800-221784600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:221779000-221780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:221779400-221780200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:221779400-221780200	Enhancers	Brain Germinal Matrix	brain
5	chr1:221779400-221780200	Enhancers	NHDF-Ad	bronchial
6	chr1:221779800-221780200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:221780000-221780200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:221780000-221785200	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:221780000-221785400	Weak transcription	Adipose Nuclei	Adipose

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