Variant report

Variant	rs11118777
Chromosome Location	chr1:221812120-221812121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:221809737..221812639-chr1:221914030..221916413,2	MCF-7	breast:
2	chr1:221716805..221717802-chr1:221811163..221812344,4	MCF-7	breast:
3	chr1:221804015..221806371-chr1:221811621..221813998,2	K562	blood:

Variant related genes	Relation type
ENSG00000143507	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1018334	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10442685	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10863640	0.84[EUR][1000 genomes]
rs11118778	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11118800	0.80[AFR][1000 genomes]
rs12023780	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12026281	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12029530	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12029601	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12136513	0.88[AFR][1000 genomes]
rs12748524	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12753128	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1879068	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933268	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2176690	0.80[AFR][1000 genomes]
rs2378461	0.88[AFR][1000 genomes]
rs3860324	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4436399	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4450027	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4484930	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6658414	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6658755	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6663135	0.83[EUR][1000 genomes]
rs6663415	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6663637	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6666514	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6677071	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6697462	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7540426	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221806200-221813600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:221811400-221817000	Weak transcription	Brain Germinal Matrix	brain
3	chr1:221811600-221818000	Weak transcription	Brain Substantia Nigra	brain

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