Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1018334	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10442685	0.82[AMR][1000 genomes]
rs10863640	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11118777	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11118778	0.82[AMR][1000 genomes]
rs12023780	0.92[CEU][hapmap];0.83[AMR][1000 genomes]
rs12026281	0.82[AMR][1000 genomes]
rs12029530	0.82[AMR][1000 genomes]
rs12029601	0.82[AMR][1000 genomes]
rs12748524	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12753128	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1933268	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3860324	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4436399	0.82[AMR][1000 genomes]
rs4450027	0.82[AMR][1000 genomes]
rs4484930	0.82[AMR][1000 genomes]
rs6658414	0.82[AMR][1000 genomes]
rs6658755	0.82[AMR][1000 genomes]
rs6663135	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6663415	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs6663637	0.82[AMR][1000 genomes]
rs6666514	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs6672743	0.80[AFR][1000 genomes]
rs6677071	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6697462	0.92[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011037	chr1:221756526-221809552	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221780000-221785200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:221780000-221785400	Weak transcription	Adipose Nuclei	Adipose
3	chr1:221780200-221785000	Weak transcription	Brain Germinal Matrix	brain
4	chr1:221780200-221785200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:221780200-221785200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:221780200-221785200	Weak transcription	NHDF-Ad	bronchial
7	chr1:221780400-221785000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:221782800-221785200	Weak transcription	A549	lung
9	chr1:221784600-221785200	Enhancers	Hela-S3	cervix
10	chr1:221784600-221785400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:221784600-221786200	Enhancers	HUES6 Cell Line	embryonic stem cell

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