Variant report

Variant	rs11119359
Chromosome Location	chr1:210054435-210054436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210053168..210055253-chr1:210056848..210058464,2	MCF-7	breast:
2	chr1:210043057..210045298-chr1:210053330..210055538,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11119360	0.94[AMR][1000 genomes]
rs12062600	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12063989	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12064085	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12064211	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12066340	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12078157	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12563527	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883332	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4844496	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4844498	0.96[AMR][1000 genomes]
rs4844908	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919217	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210041000-210055400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:210049400-210056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:210051000-210057400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:210051200-210056200	Weak transcription	NHDF-Ad	bronchial
5	chr1:210052000-210055600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:210052600-210054600	Enhancers	Brain Germinal Matrix	brain
7	chr1:210053000-210056600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:210053200-210055000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:210053200-210055800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210053200-210056200	Weak transcription	Fetal Brain Female	brain
11	chr1:210053400-210056000	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:210053400-210056400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:210053600-210055000	Weak transcription	NHEK	skin
14	chr1:210053600-210057800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:210053600-210058000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:210053600-210058800	Enhancers	Brain Hippocampus Middle	brain
17	chr1:210053800-210055600	Weak transcription	HSMMtube	muscle
18	chr1:210053800-210055800	Weak transcription	HSMM	muscle
19	chr1:210053800-210056400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:210053800-210056400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:210053800-210056400	Weak transcription	HMEC	breast
22	chr1:210053800-210056800	Weak transcription	Hela-S3	cervix
23	chr1:210054000-210056200	Weak transcription	NH-A	brain
24	chr1:210054000-210056200	Weak transcription	Osteobl	bone
25	chr1:210054000-210056400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:210054000-210056400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:210054000-210056600	Weak transcription	Brain Angular Gyrus	brain
28	chr1:210054400-210055800	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links