Variant report

Variant	rs11119377
Chromosome Location	chr1:210148346-210148347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1040424	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1040425	0.84[ASN][1000 genomes]
rs1040426	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10489346	0.81[AMR][1000 genomes]
rs10863800	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10863801	0.85[AMR][1000 genomes]
rs11119371	0.81[AMR][1000 genomes]
rs11119372	0.82[AMR][1000 genomes]
rs11119373	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11119384	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11119388	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11119391	0.85[AMR][1000 genomes]
rs11119394	0.87[AMR][1000 genomes]
rs11119398	0.81[AMR][1000 genomes]
rs12064990	0.85[AMR][1000 genomes]
rs12065575	0.85[AMR][1000 genomes]
rs12069592	0.81[AMR][1000 genomes]
rs12078802	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12084199	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12085177	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12094626	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12354000	0.82[AMR][1000 genomes]
rs12403002	0.85[AMR][1000 genomes]
rs12405519	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12405601	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12407647	0.81[AMR][1000 genomes]
rs12409582	0.85[AMR][1000 genomes]
rs12565072	0.87[AMR][1000 genomes]
rs12566314	0.84[AMR][1000 genomes]
rs4844501	0.82[AMR][1000 genomes]
rs4844502	0.81[AMR][1000 genomes]
rs4844916	0.82[AMR][1000 genomes]
rs4844923	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4844924	0.85[AMR][1000 genomes]
rs4844928	0.89[AMR][1000 genomes]
rs4844935	0.90[AMR][1000 genomes]
rs4844936	0.85[AMR][1000 genomes]
rs4844937	0.87[AMR][1000 genomes]
rs4844938	0.86[AMR][1000 genomes]
rs4844939	0.87[AMR][1000 genomes]
rs4844940	0.86[AMR][1000 genomes]
rs4844941	0.81[AMR][1000 genomes]
rs4844942	0.81[AMR][1000 genomes]
rs713114	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72649912	0.81[AMR][1000 genomes]
rs72649913	0.81[AMR][1000 genomes]
rs72649920	0.81[AMR][1000 genomes]
rs72649921	0.81[AMR][1000 genomes]
rs72649923	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72649924	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72649925	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72649937	0.86[AMR][1000 genomes]
rs72649938	0.81[AMR][1000 genomes]
rs72649940	0.81[AMR][1000 genomes]
rs760768	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1821002	chr1:210108473-210291476	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210126800-210152000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:210136600-210152600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210146400-210152800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210146600-210160400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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