Variant report

Variant	rs11119372
Chromosome Location	chr1:210118047-210118048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210117640..210119739-chr1:210131346..210133429,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1040424	0.95[AMR][1000 genomes]
rs1040426	0.95[AMR][1000 genomes]
rs10489346	0.82[AMR][1000 genomes]
rs10779520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10779521	0.85[AMR][1000 genomes]
rs10863796	1.00[EUR][1000 genomes]
rs10863800	0.95[AMR][1000 genomes]
rs10863801	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10863806	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10863809	0.85[AMR][1000 genomes]
rs11119360	1.00[EUR][1000 genomes]
rs11119361	1.00[EUR][1000 genomes]
rs11119362	1.00[EUR][1000 genomes]
rs11119371	0.98[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11119373	0.95[AMR][1000 genomes]
rs11119377	0.82[AMR][1000 genomes]
rs11119384	0.92[AMR][1000 genomes]
rs11119388	0.92[AMR][1000 genomes]
rs11119391	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11119394	0.89[AMR][1000 genomes]
rs11119398	0.82[AMR][1000 genomes]
rs11119401	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11119403	0.85[AMR][1000 genomes]
rs11119417	0.80[AMR][1000 genomes]
rs12057832	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12059828	0.85[AMR][1000 genomes]
rs12061641	0.85[AMR][1000 genomes]
rs12064990	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12065575	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12066358	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069592	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12073617	0.85[AMR][1000 genomes]
rs12078802	0.92[AMR][1000 genomes]
rs12079812	1.00[EUR][1000 genomes]
rs12084199	0.92[AMR][1000 genomes]
rs12085177	0.92[AMR][1000 genomes]
rs12089327	0.80[AMR][1000 genomes]
rs12089449	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12092527	0.80[AMR][1000 genomes]
rs12094309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12094626	0.92[AMR][1000 genomes]
rs12354000	0.97[AMR][1000 genomes]
rs12401574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12403002	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12403098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12405519	0.95[AMR][1000 genomes]
rs12405601	0.92[AMR][1000 genomes]
rs12407647	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12408689	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12409047	0.80[AMR][1000 genomes]
rs12409069	1.00[EUR][1000 genomes]
rs12409582	0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12565072	0.89[AMR][1000 genomes]
rs12566314	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1387932	0.85[AMR][1000 genomes]
rs17015564	0.85[AMR][1000 genomes]
rs17015565	0.85[AMR][1000 genomes]
rs17015566	0.85[AMR][1000 genomes]
rs2038052	1.00[EUR][1000 genomes]
rs2130625	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2130629	0.80[AMR][1000 genomes]
rs28417505	0.80[AMR][1000 genomes]
rs4844498	1.00[EUR][1000 genomes]
rs4844501	0.97[AMR][1000 genomes]
rs4844502	0.95[AMR][1000 genomes]
rs4844507	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4844916	0.97[AMR][1000 genomes]
rs4844923	0.95[AMR][1000 genomes]
rs4844924	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4844928	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4844935	0.92[AMR][1000 genomes]
rs4844936	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4844937	0.89[AMR][1000 genomes]
rs4844938	0.87[AMR][1000 genomes]
rs4844939	0.89[AMR][1000 genomes]
rs4844940	0.87[AMR][1000 genomes]
rs4844941	0.82[AMR][1000 genomes]
rs4844942	0.82[AMR][1000 genomes]
rs4844943	0.85[AMR][1000 genomes]
rs4844944	0.85[AMR][1000 genomes]
rs4844946	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs713114	0.95[AMR][1000 genomes]
rs72649912	0.95[AMR][1000 genomes]
rs72649913	0.95[AMR][1000 genomes]
rs72649914	0.93[AMR][1000 genomes]
rs72649920	0.95[AMR][1000 genomes]
rs72649921	0.95[AMR][1000 genomes]
rs72649923	0.95[AMR][1000 genomes]
rs72649924	0.95[AMR][1000 genomes]
rs72649925	0.95[AMR][1000 genomes]
rs72649937	0.87[AMR][1000 genomes]
rs72649938	0.82[AMR][1000 genomes]
rs72649940	0.82[AMR][1000 genomes]
rs72649948	0.85[AMR][1000 genomes]
rs72649949	0.85[AMR][1000 genomes]
rs72649955	0.80[AMR][1000 genomes]
rs760768	0.89[AMR][1000 genomes]
rs9787400	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1825811	chr1:210082206-210135806	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1821002	chr1:210108473-210291476	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210112600-210128400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:210113000-210118600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:210113200-210119600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210114200-210119400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210114400-210118400	Weak transcription	Brain Germinal Matrix	brain
6	chr1:210116400-210123800	Weak transcription	Brain Cingulate Gyrus	brain

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