Variant report

Variant	rs11119361
Chromosome Location	chr1:210068012-210068013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10779520	1.00[EUR][1000 genomes]
rs10863796	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863801	1.00[EUR][1000 genomes]
rs10863806	1.00[EUR][1000 genomes]
rs11119360	1.00[EUR][1000 genomes]
rs11119362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11119371	1.00[GIH][hapmap]
rs11119372	1.00[EUR][1000 genomes]
rs11119391	1.00[EUR][1000 genomes]
rs11119401	1.00[EUR][1000 genomes]
rs12057832	1.00[EUR][1000 genomes]
rs12064990	1.00[EUR][1000 genomes]
rs12065575	1.00[EUR][1000 genomes]
rs12069592	1.00[EUR][1000 genomes]
rs12079812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12089449	1.00[EUR][1000 genomes]
rs12094309	1.00[EUR][1000 genomes]
rs12401574	1.00[EUR][1000 genomes]
rs12403002	1.00[EUR][1000 genomes]
rs12403098	1.00[EUR][1000 genomes]
rs12407647	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12408689	1.00[EUR][1000 genomes]
rs12409069	1.00[EUR][1000 genomes]
rs12409582	1.00[GIH][hapmap]
rs2038052	1.00[EUR][1000 genomes]
rs2130625	1.00[EUR][1000 genomes]
rs227222	1.00[MKK][hapmap]
rs4844498	1.00[EUR][1000 genomes]
rs4844507	1.00[EUR][1000 genomes]
rs4844924	1.00[EUR][1000 genomes]
rs4844928	1.00[EUR][1000 genomes]
rs4844936	1.00[EUR][1000 genomes]
rs4844942	1.00[AFR][1000 genomes]
rs9787400	1.00[EUR][1000 genomes]
rs9919217	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210060600-210068200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210064400-210068200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:210064400-210068800	Weak transcription	HSMM	muscle
4	chr1:210064600-210068200	Weak transcription	HUVEC	blood vessel
5	chr1:210065200-210068200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:210065200-210068200	Weak transcription	Osteobl	bone
7	chr1:210066200-210068800	Enhancers	Hela-S3	cervix
8	chr1:210066600-210070800	Enhancers	NHEK	skin
9	chr1:210066800-210070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:210066800-210070800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:210067000-210068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:210067200-210068200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:210067200-210068200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:210067200-210069000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:210067200-210069600	Weak transcription	HSMMtube	muscle
16	chr1:210067400-210069600	Weak transcription	NHDF-Ad	bronchial
17	chr1:210067600-210071000	Enhancers	HMEC	breast
18	chr1:210067800-210071000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:210068000-210068800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:210068000-210069000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:210068000-210069400	Enhancers	NH-A	brain
22	chr1:210068000-210070200	Enhancers	Primary T cells from cord blood	blood
23	chr1:210068000-210070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr1:210068000-210070400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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