Variant report

Variant	rs10863796
Chromosome Location	chr1:210064615-210064616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210059417..210061400-chr1:210062480..210065007,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10779520	1.00[EUR][1000 genomes]
rs10863801	1.00[EUR][1000 genomes]
rs10863806	1.00[EUR][1000 genomes]
rs11119360	1.00[EUR][1000 genomes]
rs11119361	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119362	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11119372	1.00[EUR][1000 genomes]
rs11119391	1.00[EUR][1000 genomes]
rs11119401	1.00[EUR][1000 genomes]
rs12057832	1.00[EUR][1000 genomes]
rs12064990	1.00[EUR][1000 genomes]
rs12065575	1.00[EUR][1000 genomes]
rs12069592	1.00[EUR][1000 genomes]
rs12079812	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12089449	1.00[EUR][1000 genomes]
rs12094309	1.00[EUR][1000 genomes]
rs12401574	1.00[EUR][1000 genomes]
rs12403002	1.00[EUR][1000 genomes]
rs12407647	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12408689	1.00[EUR][1000 genomes]
rs12409069	1.00[EUR][1000 genomes]
rs2038052	1.00[EUR][1000 genomes]
rs2130625	1.00[EUR][1000 genomes]
rs4844498	1.00[EUR][1000 genomes]
rs4844507	1.00[EUR][1000 genomes]
rs4844924	1.00[EUR][1000 genomes]
rs4844928	1.00[EUR][1000 genomes]
rs4844936	1.00[EUR][1000 genomes]
rs4844942	1.00[AFR][1000 genomes]
rs9787400	1.00[EUR][1000 genomes]
rs9919217	0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210060400-210066800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:210060600-210068200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210062400-210066400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210063200-210065200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:210063200-210065400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:210063200-210065400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:210063200-210065400	Enhancers	NHEK	skin
8	chr1:210063200-210065600	Enhancers	HMEC	breast
9	chr1:210063200-210065800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:210063400-210065200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:210063600-210065200	Enhancers	NHDF-Ad	bronchial
12	chr1:210063600-210065400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:210063800-210064800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:210064000-210064800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:210064000-210064800	Enhancers	Hela-S3	cervix
16	chr1:210064000-210065200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:210064000-210065200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:210064000-210065200	Enhancers	NH-A	brain
19	chr1:210064000-210065200	Enhancers	Osteobl	bone
20	chr1:210064200-210066800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:210064400-210068200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:210064400-210068800	Weak transcription	HSMM	muscle
23	chr1:210064600-210068200	Weak transcription	HUVEC	blood vessel

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