Variant report

Variant	rs11119488
Chromosome Location	chr1:210593439-210593440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10863827	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10863828	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4845019	0.82[AFR][1000 genomes]
rs57153723	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
3	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:210573800-210594400	Weak transcription	Spleen	Spleen
5	chr1:210574400-210594400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:210574400-210595200	Weak transcription	Right Ventricle	heart
7	chr1:210585200-210593600	Weak transcription	Fetal Stomach	stomach
8	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
9	chr1:210592000-210609400	Weak transcription	Ovary	ovary
10	chr1:210592400-210593600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:210592400-210593600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:210593400-210596600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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