Variant report

Variant	rs57153723
Chromosome Location	chr1:210595283-210595284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10863829	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11119486	0.91[ASN][1000 genomes]
rs11119488	0.81[AFR][1000 genomes]
rs11119489	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11119491	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119492	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11119497	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12043880	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12117930	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12136541	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12738703	0.93[ASN][1000 genomes]
rs2092448	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2357587	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357588	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3753226	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4400614	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4601592	0.93[ASN][1000 genomes]
rs4845019	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845021	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4845023	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4845024	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4845025	0.86[AFR][1000 genomes]
rs6682398	0.91[ASN][1000 genomes]
rs7518269	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538194	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179439	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs926579	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
4	chr1:210592000-210609400	Weak transcription	Ovary	ovary
5	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210593400-210596600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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