Variant report

Variant	rs11119489
Chromosome Location	chr1:210595783-210595784
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10863829	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11119486	0.90[ASN][1000 genomes]
rs11119491	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119492	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11119497	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12043880	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12117930	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12136541	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12738703	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs2092448	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2357587	0.94[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2357588	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3753226	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4400614	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4601592	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs4845019	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845021	0.83[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4845023	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4845024	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57153723	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6682398	0.90[ASN][1000 genomes]
rs7518269	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8179439	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs926579	0.88[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756883	chr1:210579523-210620779	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2758995	chr1:210579523-210620779	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
2	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:210586400-210610800	Weak transcription	Aorta	Aorta
4	chr1:210592000-210609400	Weak transcription	Ovary	ovary
5	chr1:210592800-210625000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210593400-210596600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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