Variant report

Variant	rs11119577
Chromosome Location	chr1:210890191-210890192
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10863852	0.84[CEU][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap]
rs10863853	0.84[CEU][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap]
rs11119579	0.85[ASN][1000 genomes]
rs11119581	0.84[CEU][hapmap]
rs11119583	0.88[ASW][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap]
rs12022982	0.84[CEU][hapmap];0.92[TSI][hapmap]
rs12123293	0.83[YRI][hapmap]
rs17016775	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1934620	0.84[CEU][hapmap];0.92[TSI][hapmap]
rs1934622	0.84[CEU][hapmap]
rs1934625	0.80[CHB][hapmap]
rs1934626	0.80[CHB][hapmap]
rs1953951	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs6681860	0.83[CEU][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap]
rs7555360	0.86[YRI][hapmap]
rs9651106	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11119577	IRF6	cis	parietal	SCAN
rs11119577	DTL	cis	parietal	SCAN
rs11119577	KCNH1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210881800-210901200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:210889200-210903200	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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