Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10863854	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11119577	0.88[ASW][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap]
rs11119588	0.89[ASN][1000 genomes]
rs11119589	0.87[ASN][1000 genomes]
rs1114880	0.82[ASN][1000 genomes]
rs12022273	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12022312	0.83[ASN][1000 genomes]
rs12040025	0.85[ASN][1000 genomes]
rs1317255	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1340127	0.81[JPT][hapmap]
rs1340128	0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs17016775	0.81[CHB][hapmap]
rs1770214	0.81[ASN][1000 genomes]
rs1777244	0.80[ASN][1000 genomes]
rs1777252	0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1777254	0.85[CHB][hapmap]
rs1777255	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs1777256	0.81[CHB][hapmap]
rs1777257	0.85[CHB][hapmap]
rs1777263	0.82[ASN][1000 genomes]
rs1890846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1934625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1934626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1934632	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1934633	0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs1953951	0.81[CHB][hapmap];0.86[YRI][hapmap]
rs2358112	0.81[ASN][1000 genomes]
rs9429845	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs9429848	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11119583	DTL	cis	parietal	SCAN
rs11119583	NSL1	cis	cerebellum	SCAN
rs11119583	KCNH1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210889200-210903200	Weak transcription	HSMMtube	muscle
3	chr1:210901600-210908200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:210902400-210907600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:210903000-210903400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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