Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10863854	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs11119583	0.81[JPT][hapmap]
rs1114880	0.86[ASN][1000 genomes]
rs12022273	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12022312	0.82[ASN][1000 genomes]
rs1317255	0.95[JPT][hapmap]
rs1340128	0.85[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1343147	0.85[JPT][hapmap]
rs1770212	0.82[ASN][1000 genomes]
rs1770214	0.87[ASN][1000 genomes]
rs1770215	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1770220	0.85[JPT][hapmap]
rs1777244	0.87[ASN][1000 genomes]
rs1777247	0.81[JPT][hapmap]
rs1777252	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1777254	0.85[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1777255	0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1777256	0.89[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1777257	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1777263	0.87[ASN][1000 genomes]
rs1890845	0.86[TSI][hapmap]
rs1890846	0.81[JPT][hapmap]
rs1934625	0.81[JPT][hapmap]
rs1934626	0.81[JPT][hapmap]
rs1934632	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs1934633	1.00[JPT][hapmap]
rs2798147	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2884390	0.86[TSI][hapmap]
rs4282878	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs9429845	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs9429846	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210938600-210943000	Weak transcription	HSMMtube	muscle
2	chr1:210938600-210943800	Weak transcription	HSMM	muscle
3	chr1:210939800-210940800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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