Variant report

Variant	rs4282878
Chromosome Location	chr1:210990713-210990714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1340127	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs1343147	0.85[JPT][hapmap]
rs1770220	0.85[JPT][hapmap]
rs1770221	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1770222	0.90[ASN][1000 genomes]
rs1777247	0.81[JPT][hapmap]
rs2798147	0.85[JPT][hapmap]
rs4245749	0.85[JPT][hapmap]
rs4509646	0.80[JPT][hapmap]
rs4951640	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4951657	0.84[JPT][hapmap]
rs4951669	0.85[JPT][hapmap]
rs7556358	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210977600-210993200	Weak transcription	HSMM	muscle
2	chr1:210989000-210991400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr1:210990000-210995400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:210990600-210991400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:210990600-210992000	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links