Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10779545	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11119615	0.82[ASN][1000 genomes]
rs2357922	0.85[YRI][hapmap]
rs2884335	0.85[YRI][hapmap]
rs4113644	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4262607	0.83[AMR][1000 genomes]
rs4282878	0.85[JPT][hapmap]
rs4509646	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4532912	0.92[YRI][hapmap]
rs4634970	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4951654	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4951657	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4951669	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951674	0.93[YRI][hapmap]
rs6540626	0.85[YRI][hapmap]
rs6540630	0.85[YRI][hapmap]
rs6540631	0.92[YRI][hapmap]
rs7514500	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7527161	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7553542	0.88[CEU][hapmap]
rs7556358	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
2	chr1:211035800-211038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211035800-211038800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211036000-211054800	Weak transcription	HSMM	muscle

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