Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10779545	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11119615	0.83[ASN][1000 genomes]
rs2357922	0.85[YRI][hapmap]
rs2884335	0.85[YRI][hapmap]
rs4113644	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4245749	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4282878	0.85[JPT][hapmap]
rs4509646	0.82[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4532912	0.92[YRI][hapmap]
rs4634970	0.83[AMR][1000 genomes]
rs4951654	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4951657	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4951674	0.93[YRI][hapmap]
rs6540626	0.85[YRI][hapmap]
rs6540630	0.85[YRI][hapmap]
rs6540631	0.92[YRI][hapmap]
rs7514500	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7527161	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7553542	0.80[CEU][hapmap]
rs7556358	0.85[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv945275	chr1:211031192-211034638	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211035400	Weak transcription	HSMM	muscle
2	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
3	chr1:211027000-211035400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211031400-211035400	Weak transcription	Brain Anterior Caudate	brain
5	chr1:211032000-211033000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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