Variant report

Variant	rs2357922
Chromosome Location	chr1:211024365-211024366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1418971	0.82[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap]
rs1418974	0.82[JPT][hapmap]
rs1573159	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs1630770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1972392	0.83[AMR][1000 genomes]
rs2358095	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2884334	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2884335	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884381	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs4245746	0.82[CEU][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs4245749	0.85[YRI][hapmap]
rs4245750	0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4293011	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4509646	1.00[YRI][hapmap]
rs4532912	1.00[ASW][hapmap];0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4951641	0.82[JPT][hapmap]
rs4951657	0.80[MKK][hapmap];0.85[YRI][hapmap]
rs4951669	0.85[YRI][hapmap]
rs4951674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6540625	0.88[JPT][hapmap]
rs6540626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6540630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6540631	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527161	0.91[YRI][hapmap]
rs7532733	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7556358	0.82[MKK][hapmap];0.92[YRI][hapmap]
rs9645355	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9661232	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv520509	chr1:211021787-211041590	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211022600-211024400	Enhancers	Brain Hippocampus Middle	brain
2	chr1:211022600-211027200	Enhancers	Brain Substantia Nigra	brain
3	chr1:211023000-211024400	Enhancers	Brain Cingulate Gyrus	brain
4	chr1:211023000-211027000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr1:211023400-211026200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:211023400-211026800	Enhancers	Brain Angular Gyrus	brain
7	chr1:211023400-211027000	Enhancers	Brain Anterior Caudate	brain
8	chr1:211024000-211024400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:211024000-211024800	Enhancers	HSMMtube	muscle
10	chr1:211024200-211024400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:211024200-211024600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:211024200-211024600	Enhancers	A549	lung
13	chr1:211024200-211024800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:211024200-211024800	Enhancers	HSMM	muscle

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