Variant report

Variant	rs1972392
Chromosome Location	chr1:211044490-211044491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1630770	0.82[AMR][1000 genomes]
rs2357922	0.83[AMR][1000 genomes]
rs2884334	0.82[AMR][1000 genomes]
rs2884335	0.83[AMR][1000 genomes]
rs4293011	0.84[AMR][1000 genomes]
rs4532912	0.84[AMR][1000 genomes]
rs4951674	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6540626	0.84[AMR][1000 genomes]
rs6540630	0.85[AMR][1000 genomes]
rs6540631	0.85[AMR][1000 genomes]
rs9645355	0.85[AMR][1000 genomes]
rs9661232	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211024800-211046800	Weak transcription	HSMMtube	muscle
2	chr1:211036000-211054800	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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