Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1418971	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1418973	0.82[JPT][hapmap]
rs1573159	0.81[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs1630770	0.82[JPT][hapmap]
rs1777248	0.83[EUR][1000 genomes]
rs1777249	0.83[EUR][1000 genomes]
rs2357922	0.82[JPT][hapmap]
rs2358095	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2884335	0.88[JPT][hapmap]
rs2884381	0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs4245746	0.93[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4245750	0.82[JPT][hapmap]
rs4370814	0.82[JPT][hapmap]
rs4532912	0.88[JPT][hapmap]
rs6540625	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs6540626	0.88[JPT][hapmap]
rs6540630	0.82[JPT][hapmap]
rs6540631	0.82[JPT][hapmap]
rs7529524	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs9645355	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4951641	HOMER1	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210995400-210996800	Enhancers	Brain Angular Gyrus	brain
2	chr1:210995400-210996800	Enhancers	Brain Cingulate Gyrus	brain
3	chr1:210995400-210997200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:210996000-210996800	Enhancers	Brain Anterior Caudate	brain
5	chr1:210996000-210996800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:210996000-210997000	Enhancers	Liver	Liver
7	chr1:210996000-210997000	Enhancers	Brain Substantia Nigra	brain
8	chr1:210996000-210997200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr1:210996200-210996800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:210996400-210996800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:210996400-210996800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:210996600-211015000	Weak transcription	Brain Hippocampus Middle	brain

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