Variant report

Variant	rs7529524
Chromosome Location	chr1:210995812-210995813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12034491	0.82[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs1343142	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418971	0.94[JPT][hapmap]
rs1418973	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1418974	0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573159	0.81[CHD][hapmap];0.94[JPT][hapmap]
rs2358095	0.94[JPT][hapmap]
rs2884335	0.83[JPT][hapmap]
rs2884381	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4098807	0.93[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs4245746	0.81[CHD][hapmap]
rs4245750	0.91[CHB][hapmap]
rs4370814	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4532912	0.82[JPT][hapmap]
rs4951641	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs6540625	0.88[JPT][hapmap]
rs6540626	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7529524	IL20	cis	cerebellum	SCAN
rs7529524	CR1L	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210991400-210996000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:210995400-210996800	Enhancers	Brain Angular Gyrus	brain
3	chr1:210995400-210996800	Enhancers	Brain Cingulate Gyrus	brain
4	chr1:210995400-210997200	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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