Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1418971	0.87[CHD][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1418974	0.82[JPT][hapmap]
rs1573159	0.94[CEU][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1630770	0.88[JPT][hapmap]
rs1777248	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1777249	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2357922	0.82[CEU][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs2358095	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2884335	0.82[CEU][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap]
rs2884381	1.00[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4245750	0.88[JPT][hapmap]
rs4532912	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs4951641	0.93[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4951674	0.82[JPT][hapmap]
rs6540625	0.89[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6540626	0.82[CEU][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap]
rs6540630	0.82[CEU][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs6540631	0.82[CEU][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs7529524	0.81[CHD][hapmap]
rs9645355	0.83[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210996600-211015000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:210996800-211002600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:210997000-211002200	Weak transcription	Brain Substantia Nigra	brain

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