Variant report
| Variant | rs2358095 |
|---|---|
| Chromosome Location | chr1:210994164-210994165 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1418971 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1418973 | 0.94[JPT][hapmap] |
| rs1418974 | 0.89[JPT][hapmap] |
| rs1573159 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1630770 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs1777248 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1777249 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2357922 | 0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs2884335 | 0.82[CHB][hapmap];0.89[JPT][hapmap] |
| rs2884381 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4245746 | 0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4370814 | 0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4532912 | 0.89[JPT][hapmap] |
| rs4951641 | 1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4951674 | 0.84[CHB][hapmap] |
| rs6540625 | 0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6540626 | 0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6540630 | 0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs6540631 | 0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs7529524 | 0.94[JPT][hapmap] |
| rs9645355 | 0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873148 | chr1:210665583-210994339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873153 | chr1:210900481-210994339 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv999018 | chr1:210907239-210999306 | Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv832503 | chr1:210948760-211103163 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210990000-210995400 | Weak transcription | Brain Angular Gyrus | brain |
| 2 | chr1:210991400-210996000 | Weak transcription | Brain Hippocampus Middle | brain |
