Variant report

Variant	rs1573159
Chromosome Location	chr1:210982084-210982085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1418971	0.92[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418973	0.84[CHD][hapmap];0.94[JPT][hapmap]
rs1418974	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1630770	0.82[JPT][hapmap]
rs1777248	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777249	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357922	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs2358095	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884335	0.86[CHD][hapmap];0.89[JPT][hapmap]
rs2884381	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4245746	0.94[CEU][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4245750	0.81[JPT][hapmap]
rs4370814	0.85[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs4532912	0.86[CHD][hapmap];0.89[JPT][hapmap]
rs4951641	0.81[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs6540625	0.94[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6540626	0.86[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs6540630	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs6540631	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs7529524	0.81[CHD][hapmap];0.94[JPT][hapmap]
rs9645355	0.81[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210967400-210985000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:210977600-210993200	Weak transcription	HSMM	muscle

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