Variant report

Variant	rs7527161
Chromosome Location	chr1:211011095-211011096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10779545	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11119615	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2357922	0.91[YRI][hapmap]
rs2884335	0.91[YRI][hapmap]
rs4113644	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245749	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4509646	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4532912	1.00[YRI][hapmap]
rs4951654	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951657	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951669	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4951674	1.00[YRI][hapmap]
rs6540626	0.90[YRI][hapmap]
rs6540630	0.90[YRI][hapmap]
rs6540631	1.00[YRI][hapmap]
rs7514500	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7553542	0.92[EUR][1000 genomes]
rs7556358	0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9645355	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210996600-211015000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:211005200-211014200	Weak transcription	HSMMtube	muscle
3	chr1:211010600-211016400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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