Variant report

Variant	rs1890846
Chromosome Location	chr1:210910268-210910269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10863854	0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11119583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11119588	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11119589	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1114880	0.85[ASN][1000 genomes]
rs12022273	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12022312	0.89[ASN][1000 genomes]
rs12040025	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1317255	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1340127	0.81[JPT][hapmap]
rs1340128	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs17016775	0.81[AMR][1000 genomes]
rs1770214	0.84[ASN][1000 genomes]
rs1770215	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs1777244	0.83[ASN][1000 genomes]
rs1777252	0.94[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1777254	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs1777255	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1777256	0.82[ASN][1000 genomes]
rs1777257	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1777263	0.85[ASN][1000 genomes]
rs1890844	0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs1934625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1934626	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1934632	0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1934633	0.93[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2358112	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9429845	0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9429848	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210903800-210919200	Weak transcription	HSMMtube	muscle
3	chr1:210905600-210921200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:210910000-210910600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:210910200-210910600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:210910200-210910600	Enhancers	HUES48 Cell Line	embryonic stem cell

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