Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10863854	0.92[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11119588	0.86[EUR][1000 genomes]
rs11119589	0.86[EUR][1000 genomes]
rs12040025	0.82[EUR][1000 genomes]
rs1317255	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1770213	0.81[JPT][hapmap]
rs1777245	0.81[JPT][hapmap]
rs1777261	0.81[JPT][hapmap]
rs1777264	0.81[JPT][hapmap]
rs1890845	0.82[CEU][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs1890846	0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs1890847	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1934625	0.92[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1934626	0.92[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1934629	0.81[JPT][hapmap]
rs1934632	0.92[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs1934633	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1934636	0.81[JPT][hapmap]
rs2884390	0.82[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs9429845	0.92[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs9429846	0.81[CEU][hapmap]
rs9429848	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1890844	KCNH1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210901600-210908200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:210902400-210907600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:210903800-210919200	Weak transcription	HSMMtube	muscle
5	chr1:210905600-210921200	Weak transcription	Brain Inferior Temporal Lobe	brain

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