Variant report

Variant	rs12040025
Chromosome Location	chr1:210927497-210927498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10863854	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119583	0.85[ASN][1000 genomes]
rs11119588	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11119589	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1114880	0.88[ASN][1000 genomes]
rs12022273	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12022312	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1317255	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1340128	0.88[ASN][1000 genomes]
rs1770212	0.82[ASN][1000 genomes]
rs1770214	0.87[ASN][1000 genomes]
rs1770215	0.84[ASN][1000 genomes]
rs1777244	0.86[ASN][1000 genomes]
rs1777252	0.88[ASN][1000 genomes]
rs1777254	0.85[ASN][1000 genomes]
rs1777255	0.87[ASN][1000 genomes]
rs1777256	0.85[ASN][1000 genomes]
rs1777257	0.84[ASN][1000 genomes]
rs1777263	0.88[ASN][1000 genomes]
rs1890844	0.82[EUR][1000 genomes]
rs1890846	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1934625	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1934626	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1934632	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1934633	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9429845	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9429848	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210919800-210928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:210920800-210928200	Weak transcription	Esophagus	oesophagus
5	chr1:210921600-210931400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:210923800-210928600	Weak transcription	HSMMtube	muscle
7	chr1:210924600-210928200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210925400-210928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:210926000-210928600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:210926600-210928400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:210926600-210928400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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