Variant report

Variant	rs11120161
Chromosome Location	chr1:213747941-213747942
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12088174	0.97[ASN][1000 genomes]
rs12089111	0.85[ASN][1000 genomes]
rs12089672	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12565778	0.85[ASN][1000 genomes]
rs12567455	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17020954	0.92[AFR][1000 genomes]
rs17020995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17021011	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28459172	0.95[AFR][1000 genomes]
rs3934900	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4507981	0.96[AFR][1000 genomes]
rs4655300	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61832563	0.95[ASN][1000 genomes]
rs61832582	0.95[ASN][1000 genomes]
rs7517032	0.81[AFR][1000 genomes]
rs7519890	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs7545262	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213741000-213748200	Enhancers	HepG2	liver
2	chr1:213744600-213748400	Enhancers	Fetal Intestine Large	intestine
3	chr1:213745400-213748200	Enhancers	Fetal Intestine Small	intestine
4	chr1:213747400-213750400	Weak transcription	Small Intestine	intestine
5	chr1:213747400-213758400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:213747600-213748000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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