Variant report

Variant	rs17021011
Chromosome Location	chr1:213746863-213746864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11120161	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11120163	0.89[AMR][1000 genomes]
rs12071011	0.89[AMR][1000 genomes]
rs12077007	0.82[AMR][1000 genomes]
rs12088174	0.87[ASN][1000 genomes]
rs12089111	0.95[ASN][1000 genomes]
rs12089672	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12565778	0.95[ASN][1000 genomes]
rs12567455	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17020995	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3934900	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4655300	1.00[AMR][1000 genomes]
rs4655302	0.89[AMR][1000 genomes]
rs61832563	0.85[ASN][1000 genomes]
rs61832582	0.85[ASN][1000 genomes]
rs7545262	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213741000-213748200	Enhancers	HepG2	liver
2	chr1:213744200-213747200	Weak transcription	Small Intestine	intestine
3	chr1:213744600-213748400	Enhancers	Fetal Intestine Large	intestine
4	chr1:213745400-213748200	Enhancers	Fetal Intestine Small	intestine
5	chr1:213746000-213747200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr1:213746000-213747200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr1:213746000-213747400	Enhancers	Brain Germinal Matrix	brain
8	chr1:213746200-213747400	Enhancers	Fetal Lung	lung
9	chr1:213746400-213747000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:213746400-213747200	Enhancers	Brain Cingulate Gyrus	brain
11	chr1:213746400-213747400	Enhancers	Brain Substantia Nigra	brain
12	chr1:213746400-213747600	Enhancers	Pancreas	Pancrea
13	chr1:213746600-213747000	Enhancers	Adipose Nuclei	Adipose
14	chr1:213746600-213747200	Enhancers	Brain Anterior Caudate	brain
15	chr1:213746600-213747400	Enhancers	Brain Angular Gyrus	brain
16	chr1:213746800-213747400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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