Variant report

Variant	rs11120305
Chromosome Location	chr1:214541336-214541337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10158201	0.88[CHB][hapmap];0.83[CHD][hapmap]
rs11120303	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs12078216	0.92[CHB][hapmap]
rs12408452	0.81[ASN][1000 genomes]
rs17022757	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1846251	0.87[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs3738425	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs61821382	0.80[ASN][1000 genomes]
rs6700380	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7532953	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11120305	KCTD3	cis	parietal	SCAN
rs11120305	IRF6	cis	cerebellum	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:214519000-214557800	Weak transcription	Dnd41	blood
4	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:214522800-214552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:214526000-214544600	Weak transcription	Spleen	Spleen
8	chr1:214526400-214542400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:214527800-214542400	Weak transcription	HepG2	liver
10	chr1:214528600-214552800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:214528600-214555800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:214528800-214551800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:214529000-214584200	Weak transcription	Brain Anterior Caudate	brain
14	chr1:214529400-214561800	Weak transcription	Brain Angular Gyrus	brain
15	chr1:214529600-214544600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:214531600-214543400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:214531600-214556800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:214534000-214557000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:214535200-214542800	Weak transcription	A549	lung
20	chr1:214536000-214545400	Strong transcription	NH-A	brain
21	chr1:214536200-214551000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:214537600-214545000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:214537600-214577000	Weak transcription	Stomach Mucosa	stomach
24	chr1:214537800-214542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:214537800-214543600	Weak transcription	Esophagus	oesophagus
26	chr1:214537800-214544800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:214537800-214547400	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:214537800-214549000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:214538000-214542400	Weak transcription	Hela-S3	cervix
30	chr1:214538000-214544000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:214538000-214544800	Weak transcription	Aorta	Aorta
32	chr1:214538000-214556200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr1:214538000-214556400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:214538000-214559400	Weak transcription	Small Intestine	intestine
35	chr1:214538200-214541400	Strong transcription	HSMM	muscle
36	chr1:214538200-214544000	Weak transcription	Gastric	stomach
37	chr1:214538200-214544000	Weak transcription	Left Ventricle	heart
38	chr1:214538200-214544600	Weak transcription	Fetal Heart	heart
39	chr1:214538200-214544800	Weak transcription	Right Ventricle	heart
40	chr1:214538200-214556600	Weak transcription	Pancreas	Pancrea
41	chr1:214538400-214545000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:214538600-214542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:214538600-214543200	Strong transcription	HSMMtube	muscle
44	chr1:214538600-214544600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:214538600-214544800	Weak transcription	Ovary	ovary
46	chr1:214538600-214544800	Strong transcription	Osteobl	bone
47	chr1:214538600-214546000	Weak transcription	Lung	lung
48	chr1:214538600-214550600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:214538800-214542200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr1:214538800-214542400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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