The 2.0 version of rSNPBase

Variant report

Variant rs12408452
Chromosome Location chr1:214540347-214540348
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:214515400-214542600 Weak transcription Brain Substantia Nigra brain
3 chr1:214519000-214557800 Weak transcription Dnd41 blood
4 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
5 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:214523400-214540800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
8 chr1:214526000-214544600 Weak transcription Spleen Spleen
9 chr1:214526400-214542400 Strong transcription Fetal Adrenal Gland Adrenal Gland
10 chr1:214527400-214540600 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr1:214527800-214542400 Weak transcription HepG2 liver
12 chr1:214528600-214552800 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:214528600-214555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:214528800-214551800 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
16 chr1:214529400-214561800 Weak transcription Brain Angular Gyrus brain
17 chr1:214529600-214544600 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr1:214531600-214543400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:214531600-214556800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr1:214534000-214557000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:214534800-214540400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:214535200-214542800 Weak transcription A549 lung
23 chr1:214536000-214545400 Strong transcription NH-A brain
24 chr1:214536200-214551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:214537600-214540800 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:214537600-214545000 Weak transcription Rectal Smooth Muscle rectum
27 chr1:214537600-214577000 Weak transcription Stomach Mucosa stomach
28 chr1:214537800-214540400 Weak transcription HUVEC blood vessel
29 chr1:214537800-214540800 Weak transcription Fetal Kidney kidney
30 chr1:214537800-214540800 Weak transcription Placenta Amnion Placenta Amnion
31 chr1:214537800-214542400 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr1:214537800-214543600 Weak transcription Esophagus oesophagus
33 chr1:214537800-214544800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:214537800-214547400 Weak transcription Colon Smooth Muscle Colon
35 chr1:214537800-214549000 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr1:214538000-214540800 Weak transcription Fetal Intestine Small intestine
37 chr1:214538000-214542400 Weak transcription Hela-S3 cervix
38 chr1:214538000-214544000 Strong transcription Breast Myoepithelial Primary Cells Breast
39 chr1:214538000-214544800 Weak transcription Aorta Aorta
40 chr1:214538000-214556200 Weak transcription Duodenum Mucosa Duodenum
41 chr1:214538000-214556400 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr1:214538000-214559400 Weak transcription Small Intestine intestine
43 chr1:214538200-214540800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:214538200-214541400 Strong transcription HSMM muscle
45 chr1:214538200-214544000 Weak transcription Gastric stomach
46 chr1:214538200-214544000 Weak transcription Left Ventricle heart
47 chr1:214538200-214544600 Weak transcription Fetal Heart heart
48 chr1:214538200-214544800 Weak transcription Right Ventricle heart
49 chr1:214538200-214556600 Weak transcription Pancreas Pancrea
50 chr1:214538400-214540600 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015