Variant report

Variant	rs17022675
Chromosome Location	chr1:214525970-214525971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214518586..214520229-chr1:214524475..214526426,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11120303	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11120305	0.80[CHB][hapmap]
rs12059328	0.93[CHB][hapmap]
rs12408452	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1566249	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17022757	0.80[CHB][hapmap]
rs3738425	0.94[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4655339	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59017733	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59134396	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7532953	0.80[CHB][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214486200-214526000	Weak transcription	Psoas Muscle	Psoas
2	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:214503200-214537800	Weak transcription	Gastric	stomach
4	chr1:214504600-214533200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:214507000-214529800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:214508400-214529600	Weak transcription	Pancreas	Pancrea
7	chr1:214508400-214535000	Weak transcription	Esophagus	oesophagus
8	chr1:214508800-214528600	Weak transcription	Fetal Intestine Large	intestine
9	chr1:214511400-214529400	Weak transcription	Aorta	Aorta
10	chr1:214511400-214530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:214511400-214531200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:214511600-214528000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:214511800-214528000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:214512000-214537000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:214514000-214537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:214514800-214526400	Weak transcription	Fetal Stomach	stomach
18	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
19	chr1:214518400-214537800	Weak transcription	Fetal Brain Male	brain
20	chr1:214518600-214529000	Weak transcription	Ovary	ovary
21	chr1:214518800-214528800	Weak transcription	Fetal Kidney	kidney
22	chr1:214519000-214528600	Weak transcription	Fetal Lung	lung
23	chr1:214519000-214533800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr1:214519000-214557800	Weak transcription	Dnd41	blood
25	chr1:214519200-214526400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr1:214520400-214526800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:214520400-214526800	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:214520400-214529400	Weak transcription	Fetal Intestine Small	intestine
30	chr1:214521200-214537600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:214521600-214531000	Weak transcription	Hela-S3	cervix
32	chr1:214521800-214528800	Weak transcription	Placenta	Placenta
33	chr1:214522000-214526800	Weak transcription	NHLF	lung
34	chr1:214522800-214526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:214522800-214552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:214523400-214526400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:214523400-214526800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:214523400-214530000	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:214523400-214540800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr1:214523600-214526800	Enhancers	HSMMtube	muscle
41	chr1:214523600-214528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:214523600-214529000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:214523800-214526800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr1:214523800-214526800	Weak transcription	A549	lung
45	chr1:214523800-214527800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr1:214523800-214527800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:214523800-214527800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:214523800-214528000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr1:214523800-214529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:214523800-214529600	Weak transcription	Placenta Amnion	Placenta Amnion

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