Variant report

Variant	rs59134396
Chromosome Location	chr1:214527286-214527287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11120303	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12408452	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1472441	0.86[AFR][1000 genomes]
rs1566249	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17022675	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3738425	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4655339	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59017733	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:214503200-214537800	Weak transcription	Gastric	stomach
3	chr1:214504600-214533200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:214507000-214529800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:214508400-214529600	Weak transcription	Pancreas	Pancrea
6	chr1:214508400-214535000	Weak transcription	Esophagus	oesophagus
7	chr1:214508800-214528600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:214511400-214529400	Weak transcription	Aorta	Aorta
9	chr1:214511400-214530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:214511400-214531200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:214511600-214528000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:214511800-214528000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:214512000-214537000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr1:214514000-214537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
17	chr1:214518400-214537800	Weak transcription	Fetal Brain Male	brain
18	chr1:214518600-214529000	Weak transcription	Ovary	ovary
19	chr1:214518800-214528800	Weak transcription	Fetal Kidney	kidney
20	chr1:214519000-214528600	Weak transcription	Fetal Lung	lung
21	chr1:214519000-214533800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:214519000-214557800	Weak transcription	Dnd41	blood
23	chr1:214519200-214577200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:214520400-214529400	Weak transcription	Fetal Intestine Small	intestine
25	chr1:214521200-214537600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:214521600-214531000	Weak transcription	Hela-S3	cervix
27	chr1:214521800-214528800	Weak transcription	Placenta	Placenta
28	chr1:214522800-214552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:214523400-214530000	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:214523400-214540800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:214523600-214528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:214523600-214529000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:214523800-214527800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr1:214523800-214527800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:214523800-214527800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr1:214523800-214528000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr1:214523800-214529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:214523800-214529600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr1:214524200-214527800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:214524400-214535400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr1:214524400-214574400	Weak transcription	Brain Hippocampus Middle	brain
42	chr1:214524600-214527800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:214524800-214529200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:214524800-214531600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:214524800-214532200	Strong transcription	HUVEC	blood vessel
46	chr1:214524800-214534800	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr1:214524800-214535200	Strong transcription	NH-A	brain
48	chr1:214524800-214535400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:214524800-214537800	Strong transcription	NHEK	skin
50	chr1:214524800-214539200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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