The 2.0 version of rSNPBase

Variant report

Variant rs12059328
Chromosome Location chr1:214492596-214492597
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
2 chr1:214477400-214506400 Weak transcription Colon Smooth Muscle Colon
3 chr1:214477400-214506400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr1:214477400-214511000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:214479000-214503000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:214479400-214493000 Enhancers Fetal Heart heart
7 chr1:214482200-214510600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:214483600-214501600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:214484400-214499800 Weak transcription Primary hematopoietic stem cells blood
10 chr1:214484400-214510800 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr1:214484800-214501800 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr1:214484800-214507800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr1:214484800-214522000 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr1:214485000-214506400 Weak transcription Rectal Smooth Muscle rectum
15 chr1:214485000-214513200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr1:214485600-214499600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr1:214485800-214499600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
19 chr1:214487400-214502600 Weak transcription Colonic Mucosa Colon
20 chr1:214487400-214509400 Strong transcription Primary T cells from cord blood blood
21 chr1:214487600-214497400 Strong transcription Primary T cells fromperipheralblood blood
22 chr1:214487600-214506200 Weak transcription Small Intestine intestine
23 chr1:214487800-214494000 Strong transcription Primary T helper cells PMA-I stimulated --
24 chr1:214487800-214510600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:214488000-214493200 Strong transcription Fetal Intestine Large intestine
26 chr1:214488000-214496400 Strong transcription Dnd41 blood
27 chr1:214488000-214497800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:214488200-214493400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:214488200-214493600 Strong transcription Primary T regulatory cells fromperipheralblood blood
30 chr1:214488200-214499000 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr1:214488200-214500400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:214488200-214517600 Weak transcription Brain Germinal Matrix brain
33 chr1:214488200-214520800 Weak transcription Hela-S3 cervix
34 chr1:214488400-214493800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
35 chr1:214488400-214494000 Strong transcription Fetal Muscle Leg muscle
36 chr1:214488800-214497800 Strong transcription Fetal Stomach stomach
37 chr1:214488800-214510600 Weak transcription Fetal Brain Male brain
38 chr1:214489400-214492600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr1:214489400-214506200 Weak transcription A549 lung
40 chr1:214489400-214506600 Weak transcription Ovary ovary
41 chr1:214490000-214493000 Enhancers NHDF-Ad bronchial
42 chr1:214490000-214493400 Genic enhancers HepG2 liver
43 chr1:214490200-214501800 Weak transcription NHLF lung
44 chr1:214490200-214502400 Weak transcription Placenta Placenta
45 chr1:214490400-214493200 Strong transcription Sigmoid Colon Sigmoid Colon
46 chr1:214490400-214502400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr1:214490600-214496400 Strong transcription Primary B cells from cord blood blood
48 chr1:214490800-214492600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr1:214490800-214493200 Bivalent Enhancer H1 Cell Line embryonic stem cell
50 chr1:214490800-214493400 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015