The 2.0 version of rSNPBase

Variant report

Variant rs11580360
Chromosome Location chr1:214509830-214509831
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214471000-214517400 Weak transcription Fetal Kidney kidney
2 chr1:214477400-214511000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:214482200-214510600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:214484400-214510800 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr1:214484800-214522000 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr1:214485000-214513200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:214486200-214526000 Weak transcription Psoas Muscle Psoas
8 chr1:214487800-214510600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr1:214488200-214517600 Weak transcription Brain Germinal Matrix brain
10 chr1:214488200-214520800 Weak transcription Hela-S3 cervix
11 chr1:214488800-214510600 Weak transcription Fetal Brain Male brain
12 chr1:214490800-214518200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:214493000-214510600 Weak transcription Aorta Aorta
14 chr1:214493000-214519800 Weak transcription Brain Hippocampus Middle brain
15 chr1:214493000-214534600 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:214493800-214519000 Weak transcription Fetal Thymus thymus
17 chr1:214495600-214510400 Weak transcription NH-A brain
18 chr1:214500200-214510000 Weak transcription GM12878-XiMat blood
19 chr1:214501800-214512000 Strong transcription Primary T helper naive cells fromperipheralblood blood
20 chr1:214501800-214517800 Weak transcription Primary hematopoietic stem cells blood
21 chr1:214502600-214510800 Weak transcription iPS-15b Cell Line embryonic stem cell
22 chr1:214502600-214515000 Weak transcription Brain Angular Gyrus brain
23 chr1:214502800-214510400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:214503200-214510600 Weak transcription NHDF-Ad bronchial
25 chr1:214503200-214510800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr1:214503200-214537800 Weak transcription Gastric stomach
27 chr1:214503400-214510200 Weak transcription Duodenum Mucosa Duodenum
28 chr1:214503400-214513000 Weak transcription K562 blood
29 chr1:214503400-214518400 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr1:214503600-214511000 Weak transcription Fetal Brain Female brain
31 chr1:214503600-214511200 Weak transcription Colonic Mucosa Colon
32 chr1:214503800-214515800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:214504000-214510400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:214504400-214511000 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:214504600-214510200 Weak transcription Liver Liver
36 chr1:214504600-214517600 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:214504600-214533200 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:214504800-214510600 Weak transcription Right Atrium heart
39 chr1:214504800-214512000 Weak transcription Primary B cells from cord blood blood
40 chr1:214505200-214510800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:214505400-214512000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr1:214505600-214510600 Weak transcription H9 Cell Line embryonic stem cell
43 chr1:214506600-214510600 Weak transcription Fetal Heart heart
44 chr1:214506600-214511600 Strong transcription Fetal Adrenal Gland Adrenal Gland
45 chr1:214506800-214510600 Strong transcription Left Ventricle heart
46 chr1:214506800-214512600 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr1:214506800-214513200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:214506800-214514600 Weak transcription A549 lung
49 chr1:214507000-214510000 Weak transcription Rectal Smooth Muscle rectum
50 chr1:214507000-214510000 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015