Variant report

Variant	rs11123044
Chromosome Location	chr2:125177228-125177229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11123045	0.80[YRI][hapmap]
rs1365023	1.00[YRI][hapmap]
rs1816171	0.80[YRI][hapmap]
rs2042657	1.00[AMR][1000 genomes]
rs2553619	1.00[YRI][hapmap]
rs2565752	1.00[YRI][hapmap]
rs2584357	1.00[YRI][hapmap]
rs2901270	0.80[YRI][hapmap]
rs2920061	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs4384799	0.80[YRI][hapmap]
rs4516427	1.00[YRI][hapmap]
rs4589763	0.90[YRI][hapmap]
rs6541952	0.80[YRI][hapmap]
rs6706133	0.80[YRI][hapmap]
rs6731776	0.80[YRI][hapmap]
rs6735412	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links