Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11123044	0.80[YRI][hapmap]
rs11123045	1.00[YRI][hapmap]
rs11123047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1354392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1365023	0.80[YRI][hapmap]
rs1503998	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1816171	1.00[YRI][hapmap]
rs2042657	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2089103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2420853	0.88[YRI][hapmap]
rs2553619	0.80[YRI][hapmap]
rs2584357	0.80[YRI][hapmap]
rs2901270	1.00[YRI][hapmap]
rs2920061	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2968541	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4278930	1.00[YRI][hapmap]
rs4384799	1.00[YRI][hapmap]
rs4516427	0.80[YRI][hapmap]
rs4589763	0.89[YRI][hapmap]
rs6541952	1.00[YRI][hapmap]
rs6541953	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6541954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6706133	1.00[YRI][hapmap]
rs6707283	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6735412	1.00[YRI][hapmap]
rs7605769	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125234400-125239600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125234600-125240000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:125237800-125238800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr2:125238400-125238600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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