Variant report
| Variant | rs4278930 |
|---|---|
| Chromosome Location | chr2:125201750-125201751 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11123045 | 1.00[YRI][hapmap] |
| rs11123047 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1354392 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1503998 | 1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1816171 | 1.00[YRI][hapmap] |
| rs2042657 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
| rs2089103 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2420853 | 1.00[YRI][hapmap] |
| rs2565752 | 1.00[ASW][hapmap] |
| rs2901270 | 1.00[YRI][hapmap] |
| rs2920061 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
| rs2968541 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4384799 | 1.00[YRI][hapmap] |
| rs4589763 | 0.87[YRI][hapmap] |
| rs6541952 | 1.00[YRI][hapmap] |
| rs6541953 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs6541954 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6706133 | 1.00[YRI][hapmap] |
| rs6707283 | 1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6731776 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6735412 | 1.00[YRI][hapmap] |
| rs7605769 | 0.82[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
