Variant report

Variant	rs11124745
Chromosome Location	chr2:40767261-40767262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11124743	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11674742	0.97[ASN][1000 genomes]
rs11897805	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12470323	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12712693	0.92[ASN][1000 genomes]
rs13003481	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17026154	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72800323	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1823469	chr2:40764167-40768902	Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv1835048	chr2:40764167-40768902	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv441753	chr2:40764167-40768902	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	esv3460444	chr2:40764798-40772027	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	esv3460445	chr2:40764798-40772027	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv514063	chr2:40765204-40768032	Strong transcription Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40757800-40774800	Weak transcription	Small Intestine	intestine
2	chr2:40758800-40767600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:40762200-40767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:40766400-40768400	Enhancers	Fetal Heart	heart
5	chr2:40766600-40767400	Enhancers	Primary T cells from cord blood	blood
6	chr2:40766800-40767800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr2:40767200-40767400	Enhancers	Duodenum Mucosa	Duodenum
8	chr2:40767200-40767800	Enhancers	Fetal Intestine Small	intestine
9	chr2:40767200-40768200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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