Variant report

Variant	rs12712693
Chromosome Location	chr2:40740207-40740208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11124743	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11124745	0.92[ASN][1000 genomes]
rs11674742	0.91[ASN][1000 genomes]
rs11897805	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12470323	0.89[ASN][1000 genomes]
rs13003481	0.81[ASN][1000 genomes]
rs17026154	0.89[ASN][1000 genomes]
rs35937727	0.85[ASN][1000 genomes]
rs4952630	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40734800-40740600	Active TSS	Right Atrium	heart
2	chr2:40738600-40741600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr2:40738800-40741000	Active TSS	Primary B cells from cord blood	blood
4	chr2:40739200-40741000	Active TSS	Primary hematopoietic stem cells	blood
5	chr2:40739800-40741400	Weak transcription	Left Ventricle	heart
6	chr2:40739800-40742800	Enhancers	Fetal Heart	heart
7	chr2:40740000-40740600	Enhancers	Adipose Nuclei	Adipose
8	chr2:40740000-40743000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:40740200-40740400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:40740200-40740600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:40740200-40741800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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